The section was put in place immediately after the execution of Ajmal Kasab, the lone surviving Pakistani gunman, in connection with the Mumbai terror attack. He was hanged in November last year.
Rashtrapati Bhavan officials said on Thursday a decision to pull out the section relating to mercy petitions was taken as it was a subject matter of ministry of home affairs which will deal with the matter in future.
The section, which was a part of President's secretariat in the official website, was updated on January 11 after the President had rejected the mercy plea of death row convict Saibanna Ningappa Natikar, who had murdered his wife and daughter.
However, the section was never updated after the execution of Afzal Guru, who was sent to gallows on February nine this year.
The President's Secretariat, meanwhile, introduced a section that contained the list of mediapersons who had travelled with the Presidents of the country since 1958, when the then President Rajendra Prasad travelled abroad for the first time to Malaysia and Indonesia.
On display of the list, Rashtrapati Bhavan officials said this was in response to an RTI query.