Pandher and his domestic help Surinder Koli had been arrested last year after the recovery of at least 20 human skulls from a drain behind Pandher's Noida bungalow Dec 29.
Hearing the case of 24-year-old Payal, one of the victims, judge Rama Jain of the Central Bureau of Investigation (CBI) court found both suspended officials "prima facie accused" for concealing the case diary.
"After hearing the testimony of Payal's father Nand Lal who saw the official accepting bribes, the court finds them prima facie accused in the case and issues non-bailable warrant against them," the judge said.
The court has asked the Ghaziabad senior superintendent of police to produce them on or before Aug 29.
It was Payal's murder that had led to the unravelling of the sex-related butcheries in Nithari village in Noida, adjacent to Delhi.