Molecular biologist shares three food categories you need in your diet to improve gut microbiome

Learn from a molecular biology expert what exactly you need to put on your plate to improve the complex ecosystem of microorganisms in your gut.
Your gut health's balance depends on a complex system of microorganisms that live in your digestive tract. These microbes are responsible for several key physiological and psychological functions, including digestion, immunity, metabolism, and even concentration and mood regulation. Many of the gut axes, from the gut-immune to the gut-skin axis, reflect these bidirectional pathways where both systems influence each other. Ultimately, they all can be traced back to the activity and balance of microorganisms in your gut microbiome.
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So, for a microbiology perspective on what to eat to improve the very foundation of gut health, the microbiome, HT Lifestyle reached out to Dr Debojyoti Dhar, cofounder and director of BugSpeaks (Leucine Rich Bio), who has a PhD in molecular biology.
He explained that what you eat shapes your gut microbiome, a complex ecosystem of microorganisms. "The way to improve gut health is by consuming specific foods instead of simply eating foods from larger categories of foods called ‘food groups,’ he added, urging people to focus on gut-friendly foods.
The extent of microorganisms living in the gut is vast, almost trillions in number, as the microbiologist added, “The gut is home to trillions of microorganisms that require a diverse and stable environment. Some foods, when consumed by the host, provide nourishment to beneficial microorganisms (i.e., beneficial bacteria)”
Here are some of the foods you need to eat, as recommended by the microbiologist:
1. Fibre-rich vegetables

The microbiologist recommended eating veggies, but knowing which ones is very important, because not all vegetables have the same effect.
He advised eating two types of vegetables: leafy greens and cruciferous vegetables. Why? Dr Dhar listed the reasons along with some of the best examples:
Leafy greens
- Good sources of insoluble fibre, which provide substrate for microbiota diversity.
- Spinach, fenugreek, mustard greens, and kale
Cruciferous vegetables
- Contain compounds that benefit beneficial bacteria and aid in the detoxification process.
- Broccoli, cauliflower, cabbage, and Brussels sprouts
What happens if you eat these veggies on a daily basis? “Eating vegetables will promote short-chain fatty acid production in the colon, which strengthens the colonic barrier and reduces inflammation.”
2. Fermented food

The second set of food is fermented, which Dr Dhar highlighted as an important part of gut health. He shared that fermented foods like homemade dahi, chaas, pakhala, idli, dosa batter, and kanji are good for your gut.
So, how do fermented foods improve gut balance, and in turn, support overall wellbeing? “Fermented foods contain live cultures that directly improve digestion and assist in nutrient breakdown,” he said, explaining how they support the gut microbiome more directly.
Moreover, fermented foods are especially valuable after illness or any dietary disruptions, as during that time microbial balance is disturbed, but fermented foods, Dr Dhar observed, help to re-establish this balance and improve digestion.
3. Prebiotic-rich foods

The third and final recommendation on this list belongs to prebiotic-rich food. The biologist believes that bacteria require prebiotics as they are their energy source.
What are some of the sources and nutrient profiles? Dr Dhar revealed, “Prebiotic-rich foods, i.e., garlic, onion, leek, banana, oat, barley, chickpea, and lentil, contain substantial quantities of both soluble and insoluble fibre.”
Next, when you eat prebiotic foods, what happens to the bacteria in your digestive gut? The microbiologist explained that the beneficial bacteria 'grow and multiply,' and, in the process, they overtake or suppress the growth of harmful bacteria.
The other benefits of prebiotics, as per Dr Dhar, include regularised bowel function, better nutrient absorption, and long-term survival and stability of beneficial microbes.
Note to readers: This article is for informational purposes only and not a substitute for professional medical advice. Always seek the advice of your doctor with any questions about a medical condition.
ABOUT THE AUTHORAdrija DeyAdrija Dey’s proclivity for observation fuels her storytelling instinct. As a lifestyle journalist, she crafts compelling, relatable narratives across diverse touchpoints of the human experience, including wellness, mental health, relationships, interior design, home decor, food, travel, and fashion that gently nudge readers toward living a little better. For her, stories exist in flesh and bones, carried by human vessels and shaped through everyday endeavours. It is the small stories we live and share that make us human. After all, humans and their lores are the most natural and raw repositories of stories, and uncovering them, for her, is akin to peeling an orange under a winter afternoon sun. Always up for a chat, she believes the best stories come from unfiltered yapping, where "too much information" is kind of the point. A graduate of Indraprastha College for Women, University of Delhi, and an alumna of the Indian Institute of Mass Communication (IIMC), Delhi, Adrija spends her idle hours cocooned with herbal tea and a gripping thriller, scribbling inner monologues she loosely calls poetic pieces, often with her succulents in attendance. On lazier days, she can be found binge-watching, for the nth time, one from her comfort-show holy trinity: The Office (US), Brooklyn Nine-Nine, or Modern Family. Dancing by herself to her peppy playlists, however, is an everyday ritual she swears by religiously.Read More
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